Tuesday, June 26, 2012

What are Cold Agglutinins

Agglutinate comes from "ad+glue" means to cause to adhere as with glue, or to clump together.
Agglutinin, is any substance that is capable of causing agglutination of a particular antigen.
In blood, antibodies are agglutinins, and red blood cells (of the wrong blood group), bacteria form the antigen.

There is an auto immune disease in which circulating abnormal antibodies, usually IgM, directed against one's own red blood cells are abnormally present.
This causes hemolysis, anemia, and it is autoimmune (autoimmune hemolytic anemia)

There is maximum action at temperatures lower than body temperature and that's why it's called cold agglutinins

(This is against warm agglutinins in Warm Antibody Autoimmune Hemolytic Anemia, in which there is a more complex interaction through which IgG antibodies make macrophages bite off the membrane of RBCs turning them into spherocytes which are destroyed in spleen. Maybe since there is more number of interactions taking place, it's more efficient in higher temperatures (like chemical reactions) )

Thursday, June 7, 2012

Sugarless and sugared diabetes

di·a·be·tes/ˌdīəˈbētēz/

Noun:
A disorder of the metabolism causing
excessive thirst and the production
of large amounts of urine.


Latin mellitus, honey-sweet

Latin insipidus, insipid

in·sip·id
adj.
1. Lacking flavor or zest; not tasty.

Latin in-, not; + Latin sapidus, savory (from sapere, to taste; from
Latin sapor, flavor)


--

Diabetes mellitus is

Type 1 (Compare with primary) : Insulin depended. That is, due to
insulin deficiency.
Type 2 (Secondary, not directly due to insulin deficiency) : Insulin
independent. Due to lifestyle.

How To Study Reaction Cycles

Biochemistry is full of reactions and cascades of them.

And how to study it, is simple.

Have the idea what changes into what.
Glycolysis is glucose to pyruvate. There are 6 carbons, it must become
3, and the energy released should be trapped too. This is not easily
achieved in a single step. And so, there are multiple reactions.
Phosphorylation makes the compound easy to break. and so on..

You have a keto bond. You need to make this a C-N bond. Enter an
aspartate moiety and it's thrown out as fumarate and what will remain is
an amine! and so on..

Sunday, June 3, 2012

IUPAC numbering of purines and pyrimidines

If you've been like me, you had a hard time remembering the numbering of purines and pyrimidines and an even harder time thinking why they are numbered so. No more hard times :D

The article here says two simple rules for numbering a heterocyclic ring:
  1. Hetero atoms should have the lowest possible numbers.
  2. Carbon atoms which are shared by two rings should follow the lowest
    possible numbers.
Searching for it, I found the IUPAC rules here.





 That's pyrimidine structure for you



 And that's purine, both from wikipedia.
If you've got doubt on me, GUArdian Angels are PURe and TWO wINGED
 (Guanine and Adenosine are Purines and Two Ringed)

As is evident, the Nitrogen atoms are being given the smallest numbering. Then, the carbons that are shared between cycles are given the smallest numbers. And then, the double bonds!

Monday, May 28, 2012

What is the difference between nephrotic syndrome and nephritic syndrome

nephrotic syndrome - the renal defect in which podocytes allow protein to pass through. there is proteinuria. nephritic syndrome - the renal defect in which podocytes allow proteins and even RBCs to pass through which means there is proteinuria and hematuria as well!

Why Dipeptides Cannot or Will Not Answer Biuret Test for Proteins

Here is an explanation of the Biuret test for Proteins The Biuret reagent works because the Cu2+ cupric ions form a chelating complex with peptides. And it's shaped such that 4 peptide bond Nitrogens donates their electron pair to Copper. This is possible when there are two polypeptides acting from opposite sides. With dipeptides, the orientation can never be right because there'd be just one electron pair per molecule, thus 4 molecules would be required, and these bulky molecules can't huddle together around the Cu

Tuesday, November 29, 2011

Garrod's quadret

Let's start with Archibald Garrod. Not that he's who turned me into Biochem. Just that he's mentioned in the first page of harper textbook - the one that we consider standard.
Ok. So he is a doctor who does research - like i want to be. And he would learn from Gregor mendel's work and turn his attention into 4 diseases - alkaptonuria, cystinuria, pentosuria, and albinism (no, not albinuria). These, he discovered, had a genetic basis. May be that's why he's called the father of modern genetics. Inborn errors of metabolism, these 4, are called Garrod's quadret.
And while skimming through his wikipedia entry i found that one of his 3 sons died in Spanish flu, one pandemic that spread after first world war. Guess who's the culprit virus, after i tell you, the second wave of this hit us in the new millennium. Yes, H1N1
(A little background?
Influenza virus uses hemagglutin to bind to sialic acid in glycoproteins of cell membranes, then neuraminidase to cleave the acid and leave the cell. H5N1 is more common in birds (avian flu). Does not spread from human to human, but people who catch it suffer. The swine type is our H1N1. it spreads through swine, and humans.)
so, Garrod.